I remember the first time I tried making mini pumpkin muffins. It was a chilly fall afternoon, and I was craving something warm and comforting. I rummaged through my pantry and found a can of pumpkin puree tucked away, just waiting to shine. As I mixed the ingredients, the smell of pumpkin spice wafted through my kitchen, transporting me to a cozy café. That day, I not only baked delicious muffins but also created a cherished memory. Now, every fall, I whip up these delightful little treats to share with friends and family. They’re a hit during gatherings or just for a cozy snack at home!
These mini pumpkin muffins are not just tasty; they’re also a healthier option. Made with whole wheat flour and natural sweeteners, they’re packed with flavor and provide a nutritious bite. Whether you’re a pumpkin lover or just looking for a seasonal treat, these muffins are sure to please everyone.
In This Post
Why Make This Recipe
Mini pumpkin muffins are perfect for any occasion, from breakfast to snack time. They’re easy to make and a great way to use up pumpkin puree, especially in the fall. With their soft texture and warm spices, these muffins are a crowd-pleaser that even the kids will love!

How to Make Mini Pumpkin Muffins
Ingredients:
- 1 1/2 cups whole wheat flour (substitute all-purpose flour if preferred)
- 3/4 cup pumpkin puree (not pumpkin pie filling)
- 1/3 cup maple syrup (honey works well too)
- 1/4 cup unsweetened applesauce (replaces oil for lower fat content)
- 2 large eggs (room temperature)
- 1 tsp vanilla extract
- 1 tbsp pumpkin pie spice
- 1 tsp baking soda
- 1/2 tsp baking powder
- 1/4 tsp salt
- 1/3 cup mini dark chocolate chips (optional)
- 1/4 cup chopped walnuts or pecans (optional)
- 2 tbsp pepitas (pumpkin seeds for topping, optional)
Directions:
- Preheat your oven to 350°F (175°C) and lightly grease a 24-cup mini muffin tin with cooking spray or line with mini paper liners.
- In a medium bowl, whisk together the whole wheat flour, pumpkin pie spice, baking soda, baking powder, and salt.
- In a large bowl, whisk the pumpkin puree, maple syrup, applesauce, eggs, and vanilla extract until smooth and well combined.
- Gradually add the dry ingredient mixture to the wet ingredients, folding gently with a spatula until just combined. Stop mixing as soon as no dry flour remains visible.
- If using chocolate chips or nuts, fold them gently into the batter now.
- Using a tablespoon or small cookie scoop, fill each mini muffin cup about ¾ full. For added visual appeal, sprinkle a few pepitas on top of each muffin before baking.
- Bake for 12-14 minutes, or until a toothpick inserted into the center comes out clean with a few moist crumbs. Start checking at the 10-minute mark.
- Allow the muffins to cool in the pan for 5 minutes before transferring to a wire rack to cool completely.
Tips to Make Mini Pumpkin Muffins
- Make sure your pumpkin puree is pure and not pie filling to avoid extra sugar and spices.
- For a fun twist, experiment with different mix-ins such as dried cranberries or coconut flakes.
- Use an ice cream scoop for evenly sized muffins.
How to Serve Mini Pumpkin Muffins
These mini muffins are delicious on their own, but you can serve them warm with a pat of butter or a drizzle of honey. They’re also great with a steaming cup of coffee or tea for a perfect fall treat.
How to Store Mini Pumpkin Muffins
Store your mini pumpkin muffins in an airtight container at room temperature for up to 3 days. For longer storage, freeze them in a single layer, then transfer them to a freezer bag for up to 3 months. Just thaw them at room temperature or warm them in the microwave when you’re ready to enjoy!
Variations
- Gluten-Free: Use a gluten-free flour blend instead of whole wheat flour to make these muffins gluten-free.
- Spiced: Try adding a pinch of nutmeg or cinnamon for an extra spice kick.
- Nut-Free: Omit nuts altogether or use seeds for a nut-free version.
Mini Pumpkin Muffins
Delightful mini pumpkin muffins made with whole wheat flour and pumpkin puree, perfect for fall gatherings or a cozy snack.
- Prep Time: 15 minutes
- Cook Time: 14 minutes
- Total Time: 29 minutes
- Yield: 24 mini muffins
- Category: Snack
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
- 1 1/2 cups whole wheat flour (substitute all-purpose flour if preferred)
- 3/4 cup pumpkin puree (not pumpkin pie filling)
- 1/3 cup maple syrup (honey works well too)
- 1/4 cup unsweetened applesauce (replaces oil for lower fat content)
- 2 large eggs (room temperature)
- 1 tsp vanilla extract
- 1 tbsp pumpkin pie spice
- 1 tsp baking soda
- 1/2 tsp baking powder
- 1/4 tsp salt
- 1/3 cup mini dark chocolate chips (optional)
- 1/4 cup chopped walnuts or pecans (optional)
- 2 tbsp pepitas (pumpkin seeds for topping, optional)
Instructions
- Preheat your oven to 350°F (175°C) and lightly grease a 24-cup mini muffin tin with cooking spray or line with mini paper liners.
- In a medium bowl, whisk together the whole wheat flour, pumpkin pie spice, baking soda, baking powder, and salt.
- In a large bowl, whisk the pumpkin puree, maple syrup, applesauce, eggs, and vanilla extract until smooth and well combined.
- Gradually add the dry ingredient mixture to the wet ingredients, folding gently with a spatula until just combined. Stop mixing as soon as no dry flour remains visible.
- If using chocolate chips or nuts, fold them gently into the batter now.
- Using a tablespoon or small cookie scoop, fill each mini muffin cup about ¾ full. For added visual appeal, sprinkle a few pepitas on top of each muffin before baking.
- Bake for 12-14 minutes, or until a toothpick inserted into the center comes out clean with a few moist crumbs. Start checking at the 10-minute mark.
- Allow the muffins to cool in the pan for 5 minutes before transferring to a wire rack to cool completely.
Notes
Store muffins in an airtight container at room temperature for up to 3 days or freeze for longer storage.
FAQs
1. Can I use fresh pumpkin instead of canned?
Yes, you can use fresh pumpkin puree! Just make sure it’s well-cooked and smooth.
2. How can I make these muffins sweeter?
You can add more maple syrup or honey, or include a bit of brown sugar to increase sweetness.
3. Can I make these muffins without eggs?
Absolutely! You can replace the eggs with flax eggs (1 tablespoon of ground flaxseed mixed with 2.5 tablespoons of water) for a vegan version.




